Quick Start# 1. Clindet 1.1. Introduction 1.2. Pipeline overview 1.3. Steps 1.4. Compare to other tools 1.5. Usage 1.6. Book structure 1.7. Credits 1.8. Want to help? 2. Setup Clindet 2.1. install conda, Docker and SingularityCE 2.2. Install ClinDet 3. Use case